Publications at LaserLaB in 2011

Haagsma, A.C., I. Podasca, A. Koul, K. Andries, J. Guillemont, H. Lill and D. Bald
Probing the interaction of the diarylquinoline TMC207 with its target mycobacterial ATP synthase
PLoS One 6: e23575

Bald, D.
ATP synthase: structure, function and regulation of a complex machine
In: “Bioenergetic Processes of Cyanobacteria”, G.A. Peschek et al. (eds) Springer Science and Business Media, pp: 239-261

SMJL van den Wildenberg, Bollen YJM, Peterman EJG
How to quantify protein diffusion in the bacterial membrane
Biopolymers 95: 312-321

Saurí A, Oreshkova N, Soprova Z, Jong WS, Sani M, Peters PJ, Luirink J, van Ulsen P
Autotransporter ß-Domains Have a Specific Function in Protein Secretion beyond Outer-Membrane Targeting
J Mol Biol. 2011 Jul 23. [Epub ahead of print]

empty Yu Z, Lavèn M, Klepsch M, de Gier JW, Bitter W, van Ulsen P, Luirink J.
A role for Escherichia coli YidD in membrane protein insertion
J Bacteriol. 2011 Jul 29. [Epub ahead of print] 

Wickström D, Wagner S, Simonsson P, Pop O, Baars L, Ytterberg AJ, van Wijk KJ, Luirink J, de Gier JW
Characterization of the consequences of YidC depletion on the inner membrane proteome of E. coli using 2D blue native/SDS-PAGE
J Mol Biol. 2011 Jun 3;409(2):124-35. Epub 2011 Apr 8.

Daleke MH, Cascioferro A, de Punder K, Ummels R, Abdallah AM, van der Wel N, Peters PJ, Luirink J, Manganelli R, Bitter W
Conserved PE and PPE protein domains target LipY lipases of pathogenic mycobacteria to the cell surface via ESX-5
J Biol Chem. 2011 May 27;286(21):19024-34. Epub 2011 Apr 6.

Roussel-Jazédé V, Van Gelder P, Sijbrandi R, Rutten L, Otto BR, Luirink J, Gros P, Tommassen J, Van Ulsen P
Channel properties of the translocator domain of the autotransporter Hbp of Escherichia coli
Mol Membr Biol. 2011 Apr;28(3):157-69. Epub 2011 Feb 14.

Yu Z, Bekker M, Tramonti A, Cook GM, van Ulsen P, Scheffers DJ, de Mattos JT, De Biase D,
Luirink J
Activators of the Glutamate-Dependent Acid Resistance System Alleviate Deleterious Effects of YidC Depletion in Escherichia coli.
J Bacteriol. 2011 Mar;193(6):1308-16. Epub 2011 Jan 7.

A.M. Rijs, E.R. Kay, D.A. Leigh, and W.J. Buma
IR spectroscopy on jet-cooled isolated two-station rotaxanes
J. Phys. Chem. A 115, 9669 (2011).

S. Smolarek, A. Vdovin, A.M. Rijs, C.A. van Walree, M. Zgierski, and W.J. Buma
High-resolution spectroscopy of jet-cooled 1,1’-diphenylethylene: electronically excited and ionic states of a prototypical cross-conjugated system
J. Phys. Chem. A 115, 9399 (2011).

Y. Wang, K. Liu, X. Liu, K. Dohnalová, T. Gregorkiewicz, X. Kong, M.C.G. Aalders, W.J. Buma, and H. Zhang
Critical shell thickness of core/shell upconversion luminescence nanoplatform for FRET application
J. Phys. Chem. Letters 2, 2083 (2011).

R.H. Bremmer, D.M. de Bruin, M. de Joode, W.J. Buma, T.G. van Leeuwen, and M.C.G. Aalders
Biphasic oxidation of oxy-hemoglobin in bloodstains
PLoS One 6, e21845(2011).

N.B. Brauer, S. Smolarek, X. Zhang, W.J. Buma, and M. Drabbels
Electronic spectroscopy of aniline ions embedded in helium nanodroplets
J. Phys. Chem. Letters 2, 1563 (2011).

S. Yeremenko, O.F.A. Larsen, P. Bodis, W.J. Buma, J.S. Hannam, D.A. Leigh, S. Woutersen 
Chapter: Structural dynamics of rotaxanes studied by infrared photon echo spectroscopy
Springer Series in Chemical Physics , p. 430-432

P. Bodis, S. Yeremenko, J. Berna, W.J. Buma, D.A. Leigh, S. Woutersen 
Bimodal dynamics of mechanically constrained hydrogen bonds revealed by vibrational photon echoes
The Journal of Chemical Physics, Vol. 134 (2011), p. 134504-

S. Smolarek, A. Vdovin, E.M.M. Tan, M. de Groot, W.J. Buma
Spectroscopy and dynamics of methyl-4-hydroxycinnamate: the influence of isotopic substitution and water complexation
PCCP. Physical Chemistry Chemical Physics, Vol. 13 (2011), p. 4393-4399

S. Smolarek, A. Vdovin, E.M.M. Tan, W.J. Buma
Vibrational and electronic spectroscopy of the 4-hydroxystyrene-CO2 cluster and its hydrate: a para-coumaric acid impostor
The journal of physical chemistry. B, Vol. 115 (2011), p. 1275-1281

D.D. Günbaş, L. Zalewski, A.M. Brouwer
Solvatochromic rotaxane molecular shuttles
Chemical Communications, Vol. 47 (2011), p. 4977-4979

M. Juríček, M. Felici, P. Contreras-Carballada, J. Lauko, S.R. Bou, P.H.J. Kouwer, A.M. Brouwer, A.E. Rowan
Triazole–pyridine ligands: a novel approach to chromophoric iridium arrays 
J MATER CHEM, Vol. 21 (2011), p. 2104-2111

D. Confortin, H. Neevel, M. Brustolon, L. Franco, A.J. Kettelarij, R.M. Williams, M.R. van Bommel
Chapter: Crystal violet: Study of the photo-fading of an early synthetic dye in aqueous solution and on paper with HPLC-PDA, LC-MS and FORS
4th International Conference on: Preservation and Conservation Issues in Digital Printing and Digital Photography , p. 012011-
 
N. Mourtzis, P. Contreras Carballada, M. Felici, R.J.M. Nolte, R.M. Williams, L. De Cola, M.C. Feiters
Article: Cyclodextrin-based systems for photoinduced hydrogen evolution 
PCCP. Physical Chemistry Chemical Physics, Vol. 13 (2011), p. 7903-7909

S. Zanarini, M. Felici, G. Valenti, M. Marcaccio, L. Prodi, S. Bonacchi, P. Contreras-Carballada, R.M. Williams, M.C. Feiters, R.J.M. Nolte, L. De Cola, F. Paolucci
Green and blue electrochemically generated chemiluminescence from click chemistry—customizable iridium complexes
Chemistry - A European Journal, Vol. 17 (2011), p. 4640-4647

Hillenaar, T., V. A. D. P. Sicam, et al.
Wide-Range Calibration of Corneal Backscatter Analysis by In Vivo Confocal Microscopy. Investigative Ophthalmology & Visual Science 52(5): 2136-2146.

Kim, K. H., B. H. Park, et al.
Polarization-sensitive optical frequency domain imaging based on unpolarized light.
Optics Express 19(2): 552-561.

Chen, X., Larsen, D.S., Bradforth, S.E. & Stokkum, I.H.M. van
Broadband spectral probing revealing ultrafast photochemical branching after ultraviolet excitation of the aqueous phenolate anion.
Journal of Physical Chemistry A, 115(16), 3807-3819.

Di Donato, M., A. D. Stahl, et al.
Cofactors Involved in Light-Driven Charge Separation in Photosystem I Identified by Subpicosecond Infrared Spectroscopy.
Biochemistry 50(4): 480-490.

Ilioaia, C., M. P. Johnson, et al.
Origin of Absorption Changes Associated with Photoprotective Energy Dissipation in the Absence of Zeaxanthin.
Journal of Biological Chemistry 286(1): 91-98.

Ilioaia, C., M. P. Johnson, et al.
Photoprotection in Plants Involves a Change in Lutein 1 Binding Domain in the Major Light-harvesting Complex of Photosystem II.
Journal of Biological Chemistry 286(31): 27247-27254.

Kloz, M., S. Pillai, et al.
Carotenoid Photoprotection in Artificial Photosynthetic Antennas.
Journal of the American Chemical Society 133(18): 7007-7015.

Kruger, T.P.J. (2011, juni 30). From Disorder to Order: The functional flexibility of single plant lightharvesting complexes. VU Vrije Universiteit. Prom./coprom.: prof. dr. R. van Grondelle. 

Kruger, T.P.J., Emilie, Wientjes, Roberta, Croce & Grondelle, R. van
Conformational switching of a ight-harvesting protein suggests multifunctionality.
Proceedings of the National Academy of Sciences of the United States of America.

Kruger, T.P.J., Ilioaia, C., Johnson, M.P., Ruban, A.V., Horton, P., Papagiannakis, E. & Grondelle, R. van
Controlled disorder in plant light harvesting complex II explains its photoprotective role.
Nature.

Kruger, T. P. J., C. Ilioaia, et al.
Fluorescence Intermittency from the Main Plant Light-Harvesting Complex: Sensitivity to the Local Environment.
Journal of Physical Chemistry B 115(18): 5083-5095.

Kruger, T. P. J., C. Ilioaia, et al.
Fluorescence Intermittency from the Main Plant Light-Harvesting Complex: Resolving Shifts between Intensity Levels.
Journal of Physical Chemistry B 115(18): 5071-5082.

Laptenok, S., Visser, N.V., Engel, R., Westphal, A.H., Hoek, A. van, Mierlo, C.P.M., Stokkum, I.H.M. van, Amerongen, H. van & Visser, A.J.W.G.
A general approach to detect folding intermediates from steady-state and time-resolved fluorescence of single tryptophan-containing proteins.
Biochemistry, 50 (17), 3441-3450.

Magis, G.J, Olsen, J.D., Reynolds, N.P., Leggett, G.J., Hunter, C.N., Aartsma, T.J. & Frese, R.N.
Use of Engineered Unique Cysteine Residues to Facilitate Oriented Coupling of Proteins Directly to a Gold Substrate.
Photochemistry and Photobiology, 87, 1050-1057.

Marin, A., F. Passarini, et al.
Minor Complexes at Work: Light-Harvesting by Carotenoids in the Photosystem II Antenna Complexes CP24 and CP26.
Biophysical Journal 100(11): 2829-2838.

Mathes, T., I. H. M. van Stokkum, et al.
The Hydrogen-Bond Switch Reaction of the Blrb Bluf Domain of Rhodobacter sphaeroides.
Journal of Physical Chemistry B 115(24): 7963-7971.

Novoderezhkin, V. I., E. Romero, et al.
Multiple Charge-Separation Pathways in Photosystem II: Modeling of Transient Absorption Kinetics.
Chemphyschem 12(3): 681-688.

Novoderezhkin, V. I., T. A. C. Stuart, et al.
Dynamics of Exciton Relaxation in LH2 Antenna Probed by Multipulse Nonlinear Spectroscopy.
Journal of Physical Chemistry A 115(16): 3834-3844.
 
Pandit, A. & Frese, R.N.
Artificial leaves: towards bio-inspired solar energy converters.
In Comprehensive Renewable Energy. Elsevier.

Romero, E., I. H. M. van Stokkum, et al.
Ultrafast carotenoid band shifts correlated with Chl(z) excited states in the photosystem II reaction center: are the carotenoids involved in energy transfer?
Physical Chemistry Chemical Physics 13(13): 5573-5575.

Romero Mesa, E. (2011, maart 25). The electronic structure of photosystem II. Charge seperationdynamics. VU Vrije Universiteit. Prom./coprom.: prof. dr. R. van Grondelle & dr. J.P. Dekker.

Rupenyan, A. B., J. Vreede, et al.
Proline 68 Enhances Photoisomerization Yield in Photoactive Yellow Protein.
Journal of Physical Chemistry B 115(20): 6668-6677.

Sicam, V.A.D.P., Snellenburg, J.J. & Heijde, R.G.L. van der (13-01-2011).
METHOD OF EVALUATING A RECONSTRUCTED SURFACE, CORNEAL TOPOGRAPHER AND CALIBRATION METHOD FOR A CORNEAL TOPOGRAPHER. no US20110007144.

Stahl, A.D. (2011, september 30). Structure-function relationship in photosynthetic and photo-active proteins. A mid-Infrared investigation with femtosecond time resolution. VU Vrije Universiteit. Prom./coprom.: prof. dr. M.L. Groot & prof. dr. R. van Grondelle.

Stuart, T. A. C., M. Vengris, et al.
Direct Visualization of Exciton Reequilibration in the LH1 and LH2 Complexes of Rhodobacter sphaeroides by Multipulse Spectroscopy.
Biophysical Journal 100(9): 2226-2233.

Sytina, O. A., M. T. Alexandre, et al.
Enzyme activation and catalysis: characterisation of the vibrational modes of substrate and product in protochlorophyllide oxidoreductase.
Physical Chemistry Chemical Physics 13(6): 2307-2313.

Sytina, O. A., I. H. M. van Stokkum, et al.
Single and Multi-Exciton Dynamics in Aqueous Protochlorophyllide Aggregates.
Jurnal of Physical Chemistry A 115(16): 3936-3946.

Sznee, K., Dekker, J.P., Dame, R.T., Van Roon, H., Wuite, G.J.L. & Frese, R.N.
JUMPING MODE ATOMIC FORCE MICROSCOPY ON GRANA MEMBRANES FROM SPINACH.
Journal of Biological Chemistry

Toh, K. C., E. A. Stojkovic, et al.
Primary Reactions of Bacteriophytochrome Observed with Ultrafast Mid-Infrared Spectroscopy.
Journal of Physical Chemistry A 115(16): 3778-3786.

Toh, K. C., E. A. Stojkovic, et al.
Fluorescence quantum yield and photochemistry of bacteriophytochrome constructs.
Physical Chemistry Chemical Physics 13(25): 11985-11997.

Valkunas, L., J. Chmeliov, et al.
Excitation Migration, Quenching, and Regulation of Photosynthetic Light Harvesting in Photosystem II.
Journal of Physical Chemistry B 115(29): 9252-9260.

Vrijling, A C L, Braaf, B., Snellenburg, J.J., Lange, F. de, Zaal, M.J.W., Heijde, R.G.L. van der & Sicam, V.A.D.P. 
Clinical Validation of Point-Source Corneal Topography in Keratoplasty.
Optometry and Vision Science, 88(7), 837-842.

van der Weij-de Wit, C. D., J. P. Dekker, et al.
Charge Separation is Virtually Irreversible in Photosystem II Core Complexes with Oxidized Primary Quinone Acceptor.
Journal of Physical Chemistry A 115(16): 3947-3956.

van Oort, B., A. Marechal, et al.
Different crystal morphologies lead to slightly different conformations of light-harvesting complex II as monitored by variations of the intrinsic fluorescence lifetime.
Physical Chemistry Chemical Physics 13(27): 12614-12622.

van Stokkum, I. H. M., M. Gauden, et al.
The Primary Photophysics of the Avena sativa Phototropin 1 LOV2 Domain Observed with Time-resolved Emission Spectroscopy.
Photochemistry and Photobiology 87(3): 534-541.

Wientjes, E., Stokkum, I.H.M. van, Amerongen, H. van & Croce, R.
Excitation-energy transfer dynamics of higher plant photosystem I light-harvesting complexes.
Biophysical Journal, 100(5), 1372-1380.
 
Wientjes, E., Stokkum, I.H.M. van, Amerongen, H. van & Croce, R.
The role of the individual lhcas n photosystem i excitation energy trapping.
Biophysical Journal, 101(3), 745-754.


Witte, S., A. Negrean, et al.
Label-free live brain imaging and targeted patching with third-harmonic generation microscopy.
Proceedings of the National Academy of Sciences of the United States of America 108(15): 5970-5975.

Woronowicz, K, Sha, D, Frese, R.N. & Niederman, R.A.
The Accumulation of the Light-Harvesting 2 Complex During Remodeling of the Rhodobacter sphaeroides Intracytoplasmic Membrane Results in a Slowing of the Electron Transfer Turnover Rate of Photochemical Reaction Centers.
Biochemistry, 50(22), 4819-4829.

Woronowicz, K, Sha, D, Frese, R.N., Sturgis, J.N., Nanda, V. & Niederman, R.A.
The effects of  protein crowding in bacterial photosynthetic membranes on the flow of quinone redox species between the photochemical reaction center and the ubiquinolcytochrome c2 oxidoreductase.
Metallomics, 3, 765-774.
 
den Hollander, M, Magis, G.J, Fuchsenberger, P, Aartsma, T.J., Jones, M.R. & Frese, R.N.
Enhanced Photocurrent Generation by Photosynthetic Bacterial Reaction Centers through Molecular Relays, Light-Harvesting Complexes, and Direct Protein_Gold Interactions.
Langmuir, 27, 10282-10294.

Barwari K, de Bruin DM, Cauberg ECC, Faber DJ, van Leeuwen TG, Wijkstra H, de la Rosette J, Laguna MP
Advanced diagnostics in renal mass using optical coherence tomography: a preliminary report
J ENDOUROL 2011;25(2):311-315.   [ PubMed ]

Bosschaart N, Faber DJ, Leeuwen TGv, Aalders MCG
Measurements of wavelength dependent scattering and backscattering coefficients by low-coherence spectroscopy
J BIOMED OPT 2011;16(3):030503.   [ PubMed ]

Bratchenia A, Molenaar R, van Leeuwen TG, Kooyman RPH
Acousto-optic-assisted diffuse optical tomography
OPT LETT 2011;36(9):1539-1541.   [ PubMed ]

Bremmer RH
Non-contact spectroscopic age ddetermination of bloodstains
s.l.: s.n.; 2011. (147pp.) (ISBN 9789490371975) (PhD thesis. Supervisor(s): van Leeuwen AGJM; co-supervisor(s): Aalders MCG)   [ UvA Dissertations Online ]

Bremmer RH, de Bruin DM, de Joode M, Buma WJ, van Leeuwen TG, Aalders MCG
Biphasic Oxidation of Oxy-Hemoglobin in Bloodstains
PLOS ONE 2011;6(7):e21845.   [ PubMed ]

Bremmer RH, Kanick SC, Laan N, Amelink A, van Leeuwen TG, Aalders MCG
Non-contact spectroscopic determination of large blood volume fractions in turbid media.
BIOMED OPT EXPRESS 2011;2(2):396-407.   [ PubMed ]

Bremmer RH, Nadort A, van Leeuwen TG, van Gemert MJC, Aalders MCG
Age estimation of blood stains by hemoglobin derivative determination using reflectance spectroscopy
FORENSIC SCI INT 2011;206(1-3):166-171.   [ PubMed ]

de Kinkelder R, Kalkman J, Faber DJ, Schraa O, Kok PHB, Verbraak FD, van Leeuwen TG
Heartbeat-Induced Axial Motion Artifacts in Optical Coherence Tomography Measurements of the Retina
INVEST OPHTH VIS SCI 2011;52(6):3908-3913.   [ PubMed ]

de Kinkelder R, van der Veen RLP, Verbaak FD, Faber DJ, van Leeuwen TG, Berendschot TTJM
Macular pigment optical density measurements: evaluation of a device using heterochromatic flicker photometry
EYE 2011;25(1):105-112.   [ PubMed ]

Hartsuiker L, van Es P, Petersen W, van Leeuwen TG, Terstappen LWMM, Otto C. Quantitative detection of gold nanoparticles on individual, unstained cancer cells by scanning electron microscopy. J MICROSC-OXFORD 2011; [aheadofprint]   [ PubMed ]

Jose J, Willemink RGH, Resink S, Piras D, van Hespen JCG, Slump CH, Steenbergen W, van Leeuwen TG, Manohar S. Passive element enriched photoacoustic computed tomography (PER PACT) for simultaneous imaging of acoustic propagation properties and light absorption. OPT EXPRESS 2011;19(3):2093-2104.   [ PubMed ]

Kodach VM, Faber DJ, van Marle J, van Leeuwen TG, Kalkman J
Determination of the scattering anisotropy with optical coherence tomography
OPT EXPRESS 2011;19(7):6131-6140.   [ PubMed ]

Lankveld DP, Rayavarapu RG, Krystek P, Oomen AG, Verharen HW, van Leeuwen TG, de Jong WH, Manohar S
Blood clearance and tissue distribution of PEGylated and non-PEGylated gold nanorods after intravenous administration in rats
NANOMEDICINE-UK 2011;6(2):339-349.   [ PubMed ]

Lankveld DPK, Rayavarapu RG, Krystek P, Oomend AG, Verharen HW, van Leeuwen TG, de Jong HW, Manohar S
Blood clearance and tissue distribution of pegylated 6 gold nanorods after intravenous administration in rats
NANOMEDICINE-UK 2011;in press:--.

Leproux A, van der Voort M, van der Mark MB, Harbers R, van de Ven SMWY, van Leeuwen TG
Optical mammography combined with fluorescence imaging: lesion detection using scatterplots
BIOMED OPT EXPRESS 2011;2(4):1007-1020.   [ PubMed ]

Nguyen VD, Akca BI, Wörhoff K, de Ridder RM, Pollnau M, van Leeuwen TG, Kalkman J
Spectral domain optical coherence tomography imaging with an integrated optics spectrometer
OPT LETT 2011;36(7):1293-1295.   [ PubMed ]

Patil CA, Kalkman J, Faber DJ, Nyman JS, van Leeuwen TG, Mahadevan-Jansen A
Integrated system for combined Raman spectroscopy-spectral domain optical coherence tomography
J BIOMED OPT 2011;16(1):011007.   [ PubMed ]

Patil CA, Kirshnamoorthi H, Ellis DL, van Leeuwen TG, Mahadevan-Jansen A
A Clinical Instrument for Combined Raman Spectroscopy-Optical Coherence Tomography of Skin Cancers
LASER SURG MED 2011;43(2):143-151.   [ PubMed ]

Resink S, Jose J, Willemink RGH, Slump CH, Steenbergen W, van Leeuwen TG, Manohar S
Multiple passive element enriched photoacoustic computed tomography
OPT LETT 2011;36(15):2809-2811.   [ PubMed ]

Stam B, van Gemert MJC, van Leeuwen TG, Teeuw AH, van der Wal AC, Aalders MCG
Can color inhomogeneity of bruises be used to establish their age?
J BIOPHOTONICS 2011; [aheadofprint]   [ PubMed ]

Stehouwer M, Verbraak FD, de Vries HR, van Leeuwen TG
Scanning beyond the limits of standard OCT with a Fourier domain optical coherence tomography integrated into a slit lamp: the SL SCAN-1
EYE 2011;25(1):97-104.   [ PubMed ]

Ungureanu C, Kroes R, Petersen W, Groothuis TAM, Ungureanu F, Janssen H, van Leeuwen FWB, Kooyman RPH, Manohar S, van Leeuwen TG
Light Interactions with Gold Nanorods and Cells: Implications for Photothermal Nanotherapeutics.
NANO LETT 2011;11(5):1887-1894.   [ PubMed ]

Xia W, Piras D, Heijblom M, Steenbergen W, van Leeuwen TG, Manohar S
Poly(vinyl alcohol) gels as photoacoustic breast phantoms revisited
J BIOMED OPT 2011;16(7):075002.   [ PubMed ]

K. Babaei Gavan, J. H. Rector, K. Heeck, D. Chavan, G. Gruca, T. H. Oosterkamp, and D. Iannuzzi
Top-down approach to fiber-top cantilevers
Optics Letters 36, 2898

D. Chavan, D. Andres, and D. Iannuzzi
Ferrule-top atomic force microscope II: imaging in tapping mode and at low temperatures
Rev. Sci. Instr. 82, 046107

A. Cipullo, G. Gruca, K. Heecck, F. De Filippis, D. Iannuzzi, and L. Zeni
Ferrule-top cantilever optical fiber sensor for velocity measurements of low speed air flows
SPIE 7753, 775340

G. Gruca, J. Rector, K. Heeck, and D. Iannuzzi
Optical fiber ferrule-top sensor for humidity measurements
SPIE 7753, 775358

B. Tiribilli, G. Margheri, P. Baschieri, C. Menozzi, D. Chavan, and D. Iannuzzi
Fiber-top atomic force microscope probe with optical near field detection capabilities
J. Microscopy 242, 10

P. Zuurbier, S. de Man, G. Gruca, K. Heeck, and D. Iannuzzi
Measurement of the Casimir force with a ferrule-top sensor
New J. Phys. 13, 023027

N Fakri, Enderlein J, Pasquali M, MacKintosh FC, Schmidt CF
Carbon nanotubes as mechanical probes of equilibrium and non-equilibrium cytoskeletal networks
European Biophysics Journal with Biophysics Letters, 40(1), 159

NY Yao, D Becker, CP Broedersz, M Depken, MR Pollak, FC MacKintosh, DA Weitz
Nonlinear Viscoelasticity of Actin Transiently Cross-linked with Mutant α-Actinin-4
J Molecular Biology, 411: 1062 (2011)

M. Das, F.C. MacKintosh
Mechanics of soft composites of rods in elastic gels
Phys Rev E, 84: 061906 (2011)

CP Broedersz, X Mao, TC Lubensky, FC MacKintosh
Criticality and isostaticity in fiber networks
Nature Physics, 7: 983 (2011) 

FC MacKintosh
Active gels: Motors keep dynamics steady (News and Views)
Nature Materials, 10: 414 (2011).

M Soares e Silva, M Depken, B Stuhrmann, M Korsten, FC MacKintosh, and GH Koenderink
Active multistage coarsening of actin networks driven by myosin motors
PNAS, 108: 9408 (2011).

ME Cates and FC MacKintosh
Active Soft Matter
Soft Matter, 7: 3050 (2011).

CP Broedersz and FC MacKintosh
Molecular motors stiffen non-affine semiflexible polymer networks
Soft Matter, 7: 3186 (2011).

YC Lin, GH Koenderink, FC MacKintosh, DA Weitz
Control of non-linear elasticity in F-actin networks with microtubules
Soft Matter, 7: 902 (2011).

X. Pang, G. Gbur and T.D. Visser
The Gouy phase of Airy beams
Optics Letters, vol. 36, pp. 2492-2494 (2011).

X. Pang, T.D. Visser and E. Wolf
Phase anomaly and phase singularities of the field in the focal region of a high-numerical aperture system
Optics Communications, vol. 284, pp. 5517-5522 (2011). 

A.N. Heays, G. Dickenson, E.J. Salumbides, N. de Oliveira, D. Joyeux, L. Nahon, B.R. Lewis, W. Ubachs,
High-resolution Fourier-transform XUV photoabsorption spectroscopy study of 14N15N 
J. Chem. Phys. 135, 244301 (2011)

D.Z. Kandula, C. Gohle, T.J. Pinkert, W. Ubachs, K.S.E. Eikema
XUV frequency comb metrology on the ground state of helium
Phys. Rev. A 84, 062512 (2011)

P. Jansen, I. Kleiner, L.-H. Xu, W. Ubachs, H.L. Bethlem
Sensitivity of transitions in internal rotor molecules to a possible variation of the proton-to-electron mass ratio
Phys. Rev. A 84, 062505 (2011)

S. Witte and K.S.E. Eikema,
Ultrafast optical parametric chirped-pulse amplification (Invited paper),
IEEE. J. Sel. Topics Quantum Electron.
DOI: 10.1109/JSTQE.2011.2118370 (2011).

A.J. de Nijs, H.L. Bethlem
On deflection fields, weak-focusing and strong-focusing storage rings for polar molecules
Phys. Chem. Chem. Phys. 13, 42, 19052-19058 (2011)

A.J. de Nijs, E.J. Salumbides, K.S.E. Eikema, W. Ubachs, H.L. Bethlem
UV frequency metrology on CO (a3P);
Isotope effects and sensitivity to a variation of the proton-to-electron mass ratio

Phys. Rev. A 84, 052509 (2011)

U. Dammalapati, L. Willmann, and S. Knoop
Scattering lengths of calcium and barium isotopes
Phys. Rev. A 84, 054703 (2011) 

G. Dickenson, T. Ivanov, W. Ubachs, M. Roudjane, N. de Oliveira, D. Joyeux, L. Nahon, W.U.L. Tchang-Brillet, M. Glass-Maujean, H. Schmoranzer, A. Knie, S. Kubler, A. Ehresmann,
VUV spectroscopic study of the D1Piu state of molecular deuterium
Mol. Phys. 109, 2693-2708 (2011)

K.S.E. Eikema
FREQUENCY COMBS Liberated from material dispersion
Nature Photonics, 5(5), 258-260.

J.C.J. Koelemeij
Infrared dynamic polarizability of HD+ rovibrational states
Phys. Chem. Chem. Phys. 13, 42, 18844-18851 (2011)

J.C.J. Koelemeij
Super GPS via glasvezelnetwerken
Fotonica Magazine, June 2011

S. Knoop, T. Schuster, R. Scelle, A. Trautmann, J. Appmeier, M. K. Oberthaler, E. Tiesinga, E. Tiemann
Feshbach spectroscopy and analysis of the interaction potentials of ultracold sodium
Physical Review A 83, 042704 (2011)

D. Zhao, M.A. Haddad, H. Linnartz, W. Ubachs
C6H and C6D: electronic spectra and Renner-Teller analysis
J. Chem. Phys. 135, 044307 (2011)

D. Zhao, M.A. Haddad, H. Linnartz, W. Ubachs
Structure determination of the non-linear hydrocarbon chains C9H3 and C11H3 by deuterium labeling
J. Chem. Phys. 135, 074201 (2011)

J.A. King, M.T. Murphy, W. Ubachs, J.K. Webb,
New constraint on cosmological variation of the proton-to-electron mass ratio from Q0528-250
Monthly Not. Royal Astron. Soc. 417, 3010-3024 (2011)
Supplementary material

Pinkert, T.J., Kandula, D.Z., Gohle, C., Barmes, I., Morgenweg, J. & Eikema, K.S.E.
Widely tunable extreme UV frequency comb generation
Optics Letters, 36(11), 2026-2028.

Rooij, R. van, Borbely, J., Simonet, J., Hoogerland, M., Eikema, K.S.E., Rozendaal, R.A. & Vassen, W.
Frequency Metrology in Quantum Degenerate Helium: Direct Measurement of the 2 (3)S(1) -> 2(1)S(0) Transition
Science, 333(6039), 196--198.

E.J. Salumbides, G. Dickenson, T.I. Ivanov, W. Ubachs
QED effects in molecules: test on rotational quantum states of H2
Physics Review Letters 107(4), 10.1103/PhysRevLett.107.043005 (2011)

F. van Weerdenburg, M.T. Murphy, A.L. Malec, L. Kaper, W. Ubachs
First constraint on cosmological variation of the proton-to-electron mass ratio from two independent telescopes
Phys. Rev. Lett. 106, 180802 (2011), Supplementary material.

P. Jansen, L.-H. Xu, I. Kleiner, W. Ubachs, H.L. Bethlem
Methanol as a sensitive probe for spatial and temporal variations of the proton-to-electron mass ratio
Phys. Rev. Lett. 106, 100801 (2011), Supplementary material

D. Sprecher, Ch. Jungen, W. Ubachs, F. Merkt
Towards measuring the ionisation and dissociation energies of molecular hydrogen with sub-MHz accuracy
Faraday Discussions 150 (2011), 51-70 preprint

W. Ubachs, J. Bagdonaite, M.T. Murphy, R. Buning, L. Kaper
Search for cosmological mu variation from high-redshift H2 absorption; a status report
Accepted Astrophys. Space Science (2011), C. Martins and P. Molaro (eds.), From Varying Couplings to Fundamental Physics, p125 ArXiv version

T.I. Ivanov, C.A. de Lange, W. Ubachs,
Spectral identification of diffuse resonances in H2 above the n=2 dissociation limit
J. Chem. Phys. 134, 054309 (2011)

E.J. Salumbides, V. Maslinskas, I.M. Dildar, A.L. Wolf, E.-J. van Duijn, K.S.E. Eikema, W. Ubachs
High precision frequency measurement of the 423 nm Ca I line
Phys. Rev. A83, 012502 (2011)

F. Hamann, N. Kanekar, J.X. Prochaska, M.T. Murphy, S.L. Ellison, A.L. Malec, N. Milutinovic, W. Ubachs,
A high-velocity narrow absorption line outflow in the quasar J212329.6-005052.9
Month. Not. Roy. Astron. Soc. 410, 1957-1974 (2011)

A.L. Wolf, J. Morgenweg, J.C.J. Koelemeij, S.A. van den Berg, W. Ubachs, K.S.E. Eikema
Direct frequency-comb spectroscopy of a dipole-forbidden clock transition in trapped 40Ca+ ions
Optics Lett. 36, 49-51 (2011) 

D. Zhao, N. Wehres, H. Linnartz, W. Ubachs
Electronic spectra and structure of the non-linear carbon chain C9H3
Chem. Phys. Lett. 501, 232-237 (2011)